SummaryPython 2.7.12 with Biopython 1.68 is installed in /share/apps/python/2.7.12
This version of Python is independent of the system version of Python and includes a number of modules such as Biopython 1.68, NumPy 1.11.1, SciPy 0.18.1 and IPython 4.0.0. NumPy was compliled against the module intel/22.214.171.124 and uses the Intel MKL and the rpy2 module is linked against R/3.2.2.
You should use this module or another Python module where Python is used for compute jobs to ensure that your jobs are not affected by updates to the system version of Python.
To make sure that your Python code uses the version of Python that you have loaded using the module command your Python file should begin with
If you wish to install additional Python modules you should set up your virtual environment using the virtualenv command and then use the pip command which allows you to install modules for your own use. Information on using pip is available by typing
'pip --help' or online at https://pip.pypa.io/en/latest/quickstart.html.
More information about the commands made available by this module is available by typing
BioPython 2.7.12 is part of the bio collection of software.
BioPython 2.7.12 conflicts with the following modules and will not load if any of them is already loaded.
BioPython 2.7.12 is installed in /share/apps/smrt-python/2.7.12.
After you have loaded BioPython 2.7.12, you will be able to use the
When loaded, BioPython 2.7.12 will add the following paths to your environment.